Difference between revisions of "LobSTR"

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(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|lobstr}} |{{#vardefine:url|http://lobstr.teamerlich.org/...")
 
 
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* gcc/5.2.0
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
+
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 +
* LOBSTR_INDEXES - indexes directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 15:19, 10 June 2022

Description

lobstr website  

lobSTR is a tool for profiling Short Tandem Repeats (STRs) from high throughput sequencing data.

Environment Modules

Run module spider lobstr to find out what environment modules are available for this application.

System Variables

  • HPC_LOBSTR_DIR - installation directory
  • HPC_LOBSTR_BIN - executable directory
  • LOBSTR_INDEXES - indexes directory