Lima

From UFRC
Revision as of 19:57, 15 August 2022 by Israel.herrera (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

lima website  

Lima, the PacBio barcode demultiplexer, is the standard tool to identify barcode sequences in PacBio single-molecule sequencing data. Starting in SMRT Link v5.1.0, it is the tool that powers the Demultiplex Barcodes GUI-based analysis application. Previous versions of SMRT Link called lima's predecessors, pbbarcode and bam2bam, for demultiplexing. This new tool provides a better end-to-end user experience for analysis of multiplexed samples.


Environment Modules

Run module spider lima to find out what environment modules are available for this application.

System Variables

  • HPC_LIMA_DIR - installation directory
  • HPC_LIMA_BIN - executable directory