Difference between revisions of "LMAP"

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Revision as of 14:14, 20 April 2018


lmap website  

A package of user-friendly terminal/command-line and interactive applications developed in Perl, to enable the high-throughput analyses of multiple genes/datasets in PAML (codeml). LMAP was designed for the workstation multi-core environment and enables all the codeml codon substitutions models: site models, branch models, branch-site models and clade models.

Environment Modules

Run module spider lmap to find out what environment modules are available for this application.

System Variables

  • HPC_{{#uppercase:lmap}}_DIR - installation directory
  • HPC_{{#uppercase:lmap}}_BIN - executable directory
  • HPC_{{#uppercase:lmap}}_DOC - documentation directory
  • HPC_{{#uppercase:lmap}}_EXE - example directory


If you publish research that uses lmap you have to cite it as follows:

Emanuel Maldonado, Daniela Almeida, Tibisay Escalona, Imran Khan, Vitor Vasconcelos and Agostinho Antunes LMAP: Lightweight Multigene Analyses in PAML BMC Bioinformatics (2016), 17:354. DOI