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kmerdb website  

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

Environment Modules

Run module spider kmerdb to find out what environment modules are available for this application.

System Variables

  • HPC_KMERDB_DIR - installation directory
  • HPC_KMERDB_BIN - executable directory


If you publish research that uses kmerdb you have to cite it as follows:

Deorowicz, S., Gudyś, A., Długosz, M., Kokot, M., Danek, A. (2019) Kmer-db: instant evolutionary distance estimation, Bioinformatics, 35(1): 133–136