Difference between revisions of "Juicer"
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Revision as of 20:04, 23 February 2018
Description
Juicer is a platform for analyzing kilobase resolution Hi-C data. In this distribution, we include the pipeline for generating Hi-C maps from fastq raw data files and command line tools for feature annotation on the Hi-C maps.
Environment Modules
Run module spider juicer to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:juicer}}_DIR - installation directory
- HPC_{{#uppercase:juicer}}_BIN - executable directory