Difference between revisions of "IsoSeq3"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|isoseq3}} |{{#vardefine:url|https://github.com/PacificBiosciences/IsoSeq}} <...")
 
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Category:Software]][[Category:Phylogenetics]]
+
[[Category:Software]][[Category:Biology]][[Category:NGS]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|isoseq3}}
 
|{{#vardefine:app|isoseq3}}

Latest revision as of 20:10, 24 August 2022

Description

isoseq3 website  

IsoSeq v3 contains the newest tools to identify transcripts in PacBio single-molecule sequencing data. Starting in SMRT Link v6.0.0, those tools power the IsoSeq GUI-based analysis application. A composable workflow of existing tools and algorithms, combined with a new clustering technique, allows to process the ever-increasing yield of PacBio machines with similar performance to IsoSeq versions 1 and 2.

Environment Modules

Run module spider isoseq3 to find out what environment modules are available for this application.

System Variables

  • HPC_ISOSEQ3_DIR - installation directory
  • HPC_ISOSEQ3_BIN - executable directory