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isonclust website  

isONclust is a tool for clustering either PacBio Iso-Seq reads, or Oxford Nanopore reads into clusters, where each cluster represents all reads that came from a gene. Output is a tsv file with each read assigned to a cluster-ID. Detailed information is available in paper.

Environment Modules

Run module spider isonclust to find out what environment modules are available for this application.

System Variables

  • HPC_ISONCLUST_DIR - installation directory
  • HPC_ISONCLUST_BIN - executable directory


If you publish research that uses isonclust you have to cite it as follows:

Kristoffer Sahlin, Paul Medvedev (2019) "De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality-Value Based Algorithm", Journal of Computational Biology 2020 27:4, 472-484.