Difference between revisions of "Ibdne"

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==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 +
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==
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{{#if: {{#var: exe}}|==Additional Information==
 
{{#if: {{#var: exe}}|==Additional Information==
  
IBDseq is part of IBDNe.
+
WRITE_ADDITIONAL_INSTRUCTIONS_ON_RUNNING_THE_SOFTWARE_IF_NECESSARY
  
 
|}}
 
|}}
<!--PBS scripts-->
+
<!--Job Scripts-->
{{#if: {{#var: pbs}}|==PBS Script Examples==
+
{{#if: {{#var: job}}|==Job Script Examples==
See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.
+
See the [[{{PAGENAME}}_Job_Scripts]] page for {{#var: app}} Job script examples.
 
|}}
 
|}}
 
<!--Policy-->
 
<!--Policy-->

Latest revision as of 17:05, 27 May 2022

Description

ibdne website  

The IBDNe program estimates the historical effective population size of a homogenous population. The input for the IBDNe program is the set of identity-by-descent (IBD) segments detected by the IBDseq program.

Environment Modules

Run module spider ibdne to find out what environment modules are available for this application.

System Variables

  • HPC_IBDNE_DIR - installation directory
  • HPC_IBDNE_BIN - executable directory




Citation

If you publish research that uses ibdne you have to cite it as follows:

S R Browning and B L Browning (2015) Accurate non-parametric estimation of recent effective population size from segments of identity by descent. American Journal of Human Genetics. In Press. doi:10.1016/j.ajhg.2015.07.012