Difference between revisions of "IRFinder"

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(Created page with "Category:SoftwareCategory:BiologyCategory:RNA-Seq {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|irfinder}} |{{#vardefine:url|https://github.com/williamritchie...")
 
 
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* gcc/5.2.0
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 14:59, 10 June 2022

Description

irfinder website  

Detecting intron retention from RNA-Seq experiments

Environment Modules

Run module spider irfinder to find out what environment modules are available for this application.

System Variables

  • HPC_IRFINDER_DIR - installation directory
  • HPC_IRFINDER_BIN - executable directory