Difference between revisions of "IMOD"

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  etc.
 
  etc.
  
To see the list of all available executables in IMOD use the following command
+
To see the list of all available executables in IMOD use the following command:
 
  $ launch_imod ls $HPC_IMOD_BIN  
 
  $ launch_imod ls $HPC_IMOD_BIN  
  

Revision as of 18:04, 29 September 2016

Description

imod website  

IMOD is a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections. The package contains tools for assembling and aligning data within multiple types and sizes of image stacks, viewing 3-D data from any orientation, and modeling and display of the image files. IMOD was developed primarily by David Mastronarde, Rick Gaudette, Sue Held, Jim Kremer, Quanren Xiong, and John Heumann at the University of Colorado.

Required Modules

Serial

  • imod

System Variables

  • HPC_{{#uppercase:imod}}_DIR - installation directory

Additional Information

IMOD is installed in a container. Use the 'launch_imod' command to access IMOD executables:

$ launch_imod 3dmod
or
$ launch_imod etomo
etc.

To see the list of all available executables in IMOD use the following command:

$ launch_imod ls $HPC_IMOD_BIN