Difference between revisions of "IMOD"
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(Created page with "Category:SoftwareCategory:3D ModelingCategory:Image Reconstruction {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|imod}} |{{#vardefine:url|http://bio3d.colorad...") |
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{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
| − | + | IMOD is installed in a container. Use the 'launch_imod' command to access IMOD executables: | |
$ launch_imod 3dmod | $ launch_imod 3dmod | ||
| − | + | or | |
| + | $ launch_imod etomo | ||
| + | etc. | ||
| + | |||
To see the list of all available executables in IMOD use the following command | To see the list of all available executables in IMOD use the following command | ||
$ launch_imod ls $HPC_IMOD_BIN | $ launch_imod ls $HPC_IMOD_BIN | ||
Revision as of 18:03, 29 September 2016
Description
IMOD is a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections. The package contains tools for assembling and aligning data within multiple types and sizes of image stacks, viewing 3-D data from any orientation, and modeling and display of the image files. IMOD was developed primarily by David Mastronarde, Rick Gaudette, Sue Held, Jim Kremer, Quanren Xiong, and John Heumann at the University of Colorado.
Required Modules
Serial
- imod
System Variables
- HPC_{{#uppercase:imod}}_DIR - installation directory
Additional Information
IMOD is installed in a container. Use the 'launch_imod' command to access IMOD executables:
$ launch_imod 3dmod or $ launch_imod etomo etc.
To see the list of all available executables in IMOD use the following command
$ launch_imod ls $HPC_IMOD_BIN