Difference between revisions of "HybPiper"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
|||
| Line 35: | Line 35: | ||
--> | --> | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_EXE - example directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:22, 6 December 2019
Description
HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of Python scripts that wrap and connect bioinformatics tools in order to extract target sequences from high-throughput DNA sequencing reads.
Required Modules
Serial
- hybpiper
System Variables
- HPC_HYBPIPER_DIR - installation directory
- HPC_HYBPIPER_BIN - executable directory
- HPC_HYBPIPER_DOC - documentation directory
- HPC_HYBPIPER_EXE - example directory
Citation
If you publish research that uses hybpiper you have to cite it as follows: