Difference between revisions of "Hmmer2go"

Jump to navigation Jump to search
Line 31: Line 31:
{{#if: {{#var: exe}}1|==Usage examples==
{{#if: {{#var: exe}}1|==Usage examples==
hmmer2go getorf -i /path/to/genes.fasta -o /current/dir/or/path/to/genes_orfs.faa
<pre>.hmmer2go getorf -i /path/to/genes.fasta -o /current/dir/or/path/to/genes_orfs.faa</pre>

Revision as of 15:22, 16 March 2022


hmmer2go website  

HMMER2GO is a command line application to map DNA sequences, typically transcripts, to Gene Ontology based on the similarity of the query sequences to curated HMM models for protein families represented in Pfam.

Environment Modules

Run module spider hmmer2go to find out what environment modules are available for this application.

System Variables

  • HPC_SINGULARITY_IMAGE - singularity directory

Usage examples

.hmmer2go getorf -i /path/to/genes.fasta -o /current/dir/or/path/to/genes_orfs.faa