Difference between revisions of "HapCompass"
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Revision as of 15:18, 19 December 2014
Description
HapCompass implements a novel HAPCOMPASS algorithm for haplotype assembly of densely sequenced human genome data. The algorithm operates on a graph where SNPs are nodes and edges are defined by the sequencing reads and viewed as supporting evidence of co-occuring SNP alleles in a haplotype.
Required Modules
Serial
- hapcompass
System Variables
- HPC_{{#uppercase:hapcompass}}_DIR - installation directory