Difference between revisions of "HDF5"

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__NOTOC__
 
__NOTOC__
 
__NOEDITSECTION__
 
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[[Category:Software]]
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[[Category:Software]][[Category:Library]][[Category:Data Science]]
<!-- ########  Template Configuration ######## -->
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{|<!--Main settings - REQUIRED-->
<!--Edit definitions of the variables used in template calls
 
Required variables:
 
app - lowercase name of the application e.g. "amber"
 
url - url of the software page (project, company product, etc) - e.g. "http://ambermd.org/"
 
Optional variables:
 
INTEL - Version of the Intel Compiler e.g. "11.1"
 
MPI - MPI Implementation and version e.g. "openmpi/1.3.4"
 
-->
 
{|
 
<!--Main settings - REQUIRED-->
 
 
|{{#vardefine:app|hdf5}}
 
|{{#vardefine:app|hdf5}}
 
|{{#vardefine:url|http://www.hdfgroup.org/HDF5/}}
 
|{{#vardefine:url|http://www.hdfgroup.org/HDF5/}}
<!--Compiler and MPI settings - OPTIONAL -->
 
|{{#vardefine:intel|}} <!-- E.g. "11.1" -->
 
|{{#vardefine:mpi|}} <!-- E.g. "openmpi/1.3.4" -->
 
<!--Choose sections to enable - OPTIONAL-->
 
|{{#vardefine:mod|1}} <!--Present instructions for running the software with modules -->
 
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF-->
 
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF-->
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<!--Description-->
 
<!--Description-->
 
{{#if: {{#var: url}}|
 
{{#if: {{#var: url}}|
{{App_Description|app={{#var:app}}|url={{#var:url}}}}|}}
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
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HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
 
HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
<!--Location-->
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<!--Modules-->
{{App_Location|app={{#var:app}}|{{#var:ver}}}}
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==Environment Modules==
===Installed versions===
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* 1.8.7 serial version with GNU fortran and cxx support at: /apps/hdf5/1.8.7/serial, [[Installation log ]].
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==System Variables==
* 1.8.7 serial version with Intel 11 compilers at: /apps/hdf5/1.8.7/intel-serial
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* 1.8.7 parallel version with intel 11 compilers and mvapich2 at: /apps/hdf5/1.8.7/mvapich2
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* HPC_HDF5_BIN - executable binary directory
* 1.8.7 parallel version with intel 11 compilers and OpenMPI 1.4.3 at: /apps/hdf5/1.8.7/openmpi
 
 
 
<!-- -->
 
{{#if: {{#var: mod}}|==Running the application using modules==
 
{{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}
 
*HPC_HDF5_BIN - executable binary directory
 
 
* HPC_HDF5_LIB - library directory
 
* HPC_HDF5_LIB - library directory
 
* HPC_HDF5_INC - includes directory
 
* HPC_HDF5_INC - includes directory
{{#if: {{#var: exe}}|==Manual execution instructions==
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<!--Additional-->
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{{#if: {{#var: exe}}|==Additional Information==
 
WRITE INSTRUCTIONS ON RUNNING THE APP WITHOUT MODULES HERE|}}
 
WRITE INSTRUCTIONS ON RUNNING THE APP WITHOUT MODULES HERE|}}
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==
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{{#if: {{#var: pbs}}|==PBS Script Examples==
 
{{#if: {{#var: pbs}}|==PBS Script Examples==
 
See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}}
 
See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}}
{{#if: {{#var: policy}}|==Usage policy==
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{{#if: {{#var: policy}}|==Usage Policy==
 
WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}}
 
WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}}
 
{{#if: {{#var: testing}}|==Performance==
 
{{#if: {{#var: testing}}|==Performance==

Latest revision as of 18:16, 15 August 2022

Description

hdf5 website  

HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.

Environment Modules

Run module spider hdf5 to find out what environment modules are available for this application.

System Variables

  • HPC_HDF5_DIR - installation directory
  • HPC_HDF5_BIN - executable binary directory
  • HPC_HDF5_LIB - library directory
  • HPC_HDF5_INC - includes directory