Goatools

From UFRC
Revision as of 03:26, 2 January 2023 by Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|goatools}} |{{#vardefine:url|https://github.com/tanghaibao/goatools}} <!--CONFIGUR...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

goatools website  

Process over- and under-representation of certain GO terms, based on Fisher's exact test. With numerous multiple correction routines including locally implemented routines for Bonferroni, Sidak, Holm, and false discovery rate. Also included are multiple test corrections from statsmodels: FDR Benjamini/Hochberg, FDR Benjamini/Yekutieli, Holm-Sidak, Simes-Hochberg, Hommel, FDR 2-stage Benjamini-Hochberg, FDR 2-stage Benjamini-Krieger-Yekutieli, FDR adaptive Gavrilov-Benjamini-Sarkar, Bonferroni, Sidak, and Holm.

Environment Modules

Run module spider goatools to find out what environment modules are available for this application.

System Variables

  • HPC_GOATOOLS_DIR - installation directory




Citation

If you publish research that uses goatools you have to cite it as follows:

Cite: Klopfenstein DV, Zhang L, Pedersen BS, ... Tang H GOATOOLS: A Python library for Gene Ontology analyses Scientific reports