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Giotto website  

Giotto contains two independent yet fully integrated parts. The first part (Giotto Analyzer) is a R package that provides utilities and step-by-step instructions about the different steps in analyzing spatial single-cell data. The second part (Giotto Viewer), which is a web-based server, provides a fast and interactive viewer of spatial single-cell data and additional annotations (such as stainings, morphology and subcellular transcript localization information). These two parts can be used either independently or iteratively.

Environment Modules

Run module spider Giotto to find out what environment modules are available for this application.

System Variables

  • HPC_GIOTTO_DIR - installation directory