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getorganelle website  

This toolkit assemblies organelle genome from genomic skimming data.

Environment Modules

Run module spider getorganelle to find out what environment modules are available for this application.

System Variables

  • HPC_GETORGANELLE_DIR - installation directory
  • HPC_GETORGANELLE_BIN - executable directory


If you publish research that uses getorganelle you have to cite it as follows:

Jian-Jun Jin*, Wen-Bin Yu*, Jun-Bo Yang, Yu Song, Ting-Shuang Yi, De-Zhu Li. 2018. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. bioRxiv, 256479.