Difference between revisions of "GenomicNeuralnet"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|genomicneuralnet}} |{{#vardefine:url|https://github.com/rileymcdowell/genomi...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 22:09, 27 August 2020
Description
This python code leverages the pybrain and scikit-learn libraries, as well as a built-in artifical neural network implementation to perform genomic selection on genotypic and phenotypic data. It compares prediction accuracy between modeling methods.
Environment Modules
Run module spider genomicneuralnet to find out what environment modules are available for this application.
System Variables
- HPC_GENOMICNEURALNET_DIR - installation directory
- HPC_GENOMICNEURALNET_BIN - executable directory