Difference between revisions of "GapCloser"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|gapcloser}} |{{#vardefine:url|http://soap.genomics.org.cn/about.html}} <!--CONFIGU...") |
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| − | [[Category:Software]][[Category:Biology]] | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|gapcloser}} | |{{#vardefine:app|gapcloser}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 16:52, 15 August 2022
Description
GapCloser v1.12 for SOAPdenovo. The GapCloser is designed to close the gaps emerging during the scaffolding process by SOAPdenovo or other assembler, using the abundant pair relationships of short reads.
Environment Modules
Run module spider gapcloser to find out what environment modules are available for this application.
System Variables
- HPC_GAPCLOSER_DIR - installation directory