GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis rate of the sequencing sample, developed by Binghang Liu email@example.com). The estimated result can be used to design the sequencing strategy.
module spider gce to find out what environment modules are available for this application.
- HPC_GCE_DIR - installation directory
- HPC_GCE_BIN - executable directory
If you publish research that uses gce you have to cite it as follows:
Binghang Liu, Yujian Shi, Jianying Yuan, et al. and Wei Fan*. Estimation of genomic characteristics by analyzing k-mer frequency in de novo genome project. arXiv.org arXiv: 1308.2012. (2013)