Revision as of 16:49, 15 August 2022 by Israel.herrera (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search


Freyja website  

Freyja is a tool to recover relative lineage abundances from mixed SARS-CoV-2 samples from a sequencing dataset (BAM aligned to the Hu-1 reference). The method uses lineage-determining mutational "barcodes" derived from the UShER global phylogenetic tree as a basis set to solve the constrained (unit sum, non-negative) de-mixing problem.

Environment Modules

Run module spider Freyja to find out what environment modules are available for this application.

System Variables

  • HPC_FREYJA_DIR - installation directory
  • HPC_FREYJA_BIN - executable directory