Difference between revisions of "Freesurfer"
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Latest revision as of 20:09, 12 August 2022
Freesurfer is a set of automated tools for reconstruction of the brain’s cortical surface from structural MRI data, and overlay of functional MRI data onto the reconstructed surface.
module spider freesurfer to find out what environment modules are available for this application.
- HPC_FREESURFER_DIR - installation directory
Starting with freesurfer/6.0.0 the software is available as a Singularity container. To run any executable use the 'launch_freesurfer' wrapper after loading the module.
Freesurfer comes with Freeview software. Freeview is a completely separate software from Freesurfer and is used purely for data visualization. Freesurfer 6 includes Freeview 2.0.
If you publish research that uses freesurfer you have to cite it as follows:
See  in the Freesurfer wiki on how to correctly cite Freesurfer tools.