Difference between revisions of "FreeBayes"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replace - "|{{#vardefine:intel|}} <!-- E.g. "11.1" --> |{{#vardefine:mpi|}} <!-- E.g. "openmpi/1.3.4" -->" to "") |
Moskalenko (talk | contribs) m (Text replace - "]] {| <!--Main settings - REQUIRED-->" to "]] {|<!--Main settings - REQUIRED-->") |
||
| Line 2: | Line 2: | ||
__NOEDITSECTION__ | __NOEDITSECTION__ | ||
[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] | [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] | ||
| − | + | {|<!--Main settings - REQUIRED--> | |
| − | {| | ||
| − | <!--Main settings - REQUIRED--> | ||
|{{#vardefine:app|freebayes}} | |{{#vardefine:app|freebayes}} | ||
|{{#vardefine:url|http://bioinformatics.bc.edu/marthlab/FreeBayes}} | |{{#vardefine:url|http://bioinformatics.bc.edu/marthlab/FreeBayes}} | ||
Revision as of 18:10, 10 August 2012
|
|
Description
FreeBayes is a high-performance, flexible, and open-source Bayesian genetic variant detector. It operates on BAM alignment files, which are produced by most contemporary short-read aligners.
In addition to substantial performance improvements over its predecessors (PolyBayes, GigaBayes, and BamBayes), it expands the scope of SNP and small-indel variant calling to populations of individuals with heterogeneous copy number. FreeBayes is currently under active development.
Required Modules
Serial
- freebayes
- HPC_FREEBAYES_BIN - executable directory