Fastx Toolkit

Description

fastx_toolkit website  

The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.

Installed Versions

• 0.0.13.1

Execution Environment and Modules

To use fastx_toolkit with the environment modules system at HPC the following commands are available:

Get module information for fastx toolkit:

$module spider fastx_toolkit

Load the default application module:

$module load fastx_toolkit

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

• HPC_FASTX_TOOLKIT_DIR - directory where fastx_toolkit is located.
• HPC_FASTX_TOOLKIT_BIN - executable directory