Difference between revisions of "Fastx Toolkit"
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__NOTOC__ | __NOTOC__ | ||
__NOEDITSECTION__ | __NOEDITSECTION__ | ||
| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:NGS]] |
{|<!--Main settings - REQUIRED--> | {|<!--Main settings - REQUIRED--> | ||
|{{#vardefine:app|fastx_toolkit}} | |{{#vardefine:app|fastx_toolkit}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
* HPC_FASTX_TOOLKIT_BIN - executable directory | * HPC_FASTX_TOOLKIT_BIN - executable directory | ||
{{#if: {{#var: exe}}|==How To Run== | {{#if: {{#var: exe}}|==How To Run== | ||
Latest revision as of 16:37, 15 August 2022
Description
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
Environment Modules
Run module spider fastx_toolkit to find out what environment modules are available for this application.
System Variables
- HPC_FASTX_TOOLKIT_DIR - installation directory
- HPC_FASTX_TOOLKIT_BIN - executable directory