FastStructure

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Description

faststructure website  

A variational framework for inferring population structure from SNP genotype data.

It is based on a variational Bayesian framework for posterior inference and is written in Python2.x.

Required Modules

Serial

  • faststructure

System Variables

  • HPC_FASTSTRUCTURE_DIR - installation directory




Citation

If you publish research that uses faststructure you have to cite it as follows:

Anil Raj, Matthew Stephens, and Jonathan K. Pritchard. fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets , (Genetics) June 2014 197:573-589 (Genetics, Biorxiv).


Validation

  • Validated 4/5/2018