FastSpar

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Description

fastspar website  

FastSpar is a c++ implementation of the SparCC algorithm published here: Friedman, J. & Alm, E. J. Inferring correlation networks from genomic survey data. PLoS Comput. Biol. 8, e1002687 (2012). FastSpar is up to several thousand times faster than the original Python2 implementation and uses much less memory.

Required Modules

Serial

  • fastspar

System Variables

  • HPC_{{#uppercase:fastspar}}_DIR - installation directory