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fmriprep website  

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Environment Modules

Run module spider fmriprep to find out what environment modules are available for this application.

System Variables

  • HPC_FMRIPREP_DIR - installation directory
  • HPC_FMRIPREP_BIN - executable directory
  • HPC_FREESURFER_LIC - FreeSurfer license directory


If you publish research that uses fmriprep you have to cite it as follows:

Please acknowledge this work using the citation boilerplate that fMRIPrep includes in the visual report generated for every subject processed.