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flair website  

FLAIR (Full-Length Alternative Isoform analysis of RNA) for the correction, isoform definition, and alternative splicing analysis of noisy reads. FLAIR has primarily been used for nanopore cDNA, native RNA, and PacBio sequencing reads.

Environment Modules

Run module spider flair to find out what environment modules are available for this application.

System Variables

  • HPC_FLAIR_DIR - installation directory
  • HPC_FLAIR_BIN - executable directory


If you publish research that uses flair you have to cite it as follows:

Tang, A.D., Soulette, C.M., van Baren, M.J. et al. Full-length transcript characterization of SF3B1 mutation in chronic lymphocytic leukemia reveals downregulation of retained introns. Nat Commun 11, 1438 (2020).