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fgtpartitioner website  

Partitions genome data using the 4-gamete test into a minimal number of blocks which contain no recombinations (=FGT conflicts).

Environment Modules

Run module spider fgtpartitioner to find out what environment modules are available for this application.

System Variables

  • HPC_FGTPARTITIONER_DIR - installation directory


If you publish research that uses fgtpartitioner you have to cite it as follows:

Chafin, TK. 2020. FGTpartitioner: Parsimonious delimitation of ancestry breakpoints in large genome-wide SNP datasets. Journal of Open Source Software, 5(46), 2030, https://doi.org/10.21105/joss.02030