Difference between revisions of "Exonerate"
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* It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. | * It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. | ||
* If you have questions, you can email the [mailto:guy@ebi.ac.uk Author]. | * If you have questions, you can email the [mailto:guy@ebi.ac.uk Author]. | ||
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==Available versions== | ==Available versions== | ||
Revision as of 01:59, 10 August 2012
Description
- Exonerate is a generic tool for pairwise sequence comparison.
- It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.
- If you have questions, you can email the Author.
Available versions
- 2.2
Running the application using modules
To use exonerate with the environment modules system at HPC the following commands are available:
Get module information for exonerate:
$module spider exonerate
Load the default application module:
$module load exonerate
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_EXONERATE_DIR - directory where exonerate is located.