Difference between revisions of "Exonerate"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|exonerate}} |{{#vardefine:url|http://www.ebi.ac.uk/~guy/e...") |
Moskalenko (talk | contribs) m (Text replace - "{{App_Description|app={{#var:app}}|url={{#var:url}}}}|}}" to "{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} ") |
||
| Line 19: | Line 19: | ||
<!--Description--> | <!--Description--> | ||
{{#if: {{#var: url}}| | {{#if: {{#var: url}}| | ||
| − | {{App_Description|app={{#var:app}}|url={{#var:url}}}}|}} | + | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} |
| + | |||
* Exonerate is a generic tool for pairwise sequence comparison. | * Exonerate is a generic tool for pairwise sequence comparison. | ||
* It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. | * It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. | ||
Revision as of 01:53, 10 August 2012
Description
- Exonerate is a generic tool for pairwise sequence comparison.
- It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.
- If you have questions, you can email the Author.
Available versions
- 2.2
Running the application using modules
To use exonerate with the environment modules system at HPC the following commands are available:
Get module information for exonerate:
$module spider exonerate
Load the default application module:
$module load exonerate
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_EXONERATE_DIR - directory where exonerate is located.