Difference between revisions of "Exonerate"

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(Created page with "Category:SoftwareCategory:BioinformaticsCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|exonerate}} |{{#vardefine:url|http://www.ebi.ac.uk/~guy/e...")
 
 
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[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
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[[Category:Software]][[Category:Biology]][[Category:Genomics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|exonerate}}
 
|{{#vardefine:app|exonerate}}
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<!--Description-->
 
<!--Description-->
 
{{#if: {{#var: url}}|
 
{{#if: {{#var: url}}|
{{App_Description|app={{#var:app}}|url={{#var:url}}}}|}}
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
 +
 
 
* Exonerate is a generic tool for pairwise sequence comparison.
 
* Exonerate is a generic tool for pairwise sequence comparison.
 
* It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.
 
* It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.
 
* If you have questions, you can email the [mailto:guy@ebi.ac.uk Author].
 
* If you have questions, you can email the [mailto:guy@ebi.ac.uk Author].
<!--Location-->
+
 
{{App_Location|app={{#var:app}}|{{#var:ver}}}}
 
<!--Versions-->
 
==Available versions==
 
* 2.2
 
 
<!--Modules-->
 
<!--Modules-->
{{#if: {{#var: mod}}|==Running the application using modules==
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==Environment Modules==
{{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
<!--Add additional HPC_FOO_BIN and other ENV VARIABLES below-->
+
==System Variables==
 +
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Run-->
 
<!--Run-->
 +
 
{{#if: {{#var: exe}}|==How To Run==
 
{{#if: {{#var: exe}}|==How To Run==
 
DOUBLE_CLICK_TO_WRITE_INSTRUCTIONS_ON_RUNNING_THE_ACTUAL_BINARY
 
DOUBLE_CLICK_TO_WRITE_INSTRUCTIONS_ON_RUNNING_THE_ACTUAL_BINARY
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See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}}
 
See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}}
 
<!--Policy-->
 
<!--Policy-->
{{#if: {{#var: policy}}|==Usage policy==
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{{#if: {{#var: policy}}|==Usage Policy==
 
WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)
 
WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)
 
|}}
 
|}}

Latest revision as of 18:53, 12 August 2022

Description

exonerate website  

  • Exonerate is a generic tool for pairwise sequence comparison.
  • It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.
  • If you have questions, you can email the Author.

Environment Modules

Run module spider exonerate to find out what environment modules are available for this application.

System Variables

  • HPC_EXONERATE_DIR - installation directory