Difference between revisions of "Emerald"
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Revision as of 19:12, 29 October 2023
Description
DESCRIPTION Tools for rapid on-the-fly LD calculation
Exploits sparsity and haplotype structure to efficiently calculate LD Uses tabix indexes to support rapid querying of genomic regions Supports VCF (phased or unphased) and M3VCF formats Supports integration with Python and R
Environment Modules
Run module spider emeraLD to find out what environment modules are available for this application.
System Variables
- HPC_EMERALD_DIR - installation directory
- HPC_EMERALD_BIN - executable directory