EVidenceModeler
Revision as of 14:59, 27 July 2020 by Maxprok (talk | contribs) (Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|evidencemodeler}} |{{#vardefine:url|https://evidencemodeler.github.io/}} <!-...")
Description
The EVidenceModeler (aka EVM) software combines ab intio gene predictions and protein and transcript alignments into weighted consensus gene structures. EVM provides a flexible and intuitive framework for combining diverse evidence types into a single automated gene structure annotation system.
Inputs to EVM include the genome sequence, gene predictions and alignment data in GFF3 format, and a list of numeric weight values to be applied to each type of evidence. The weights can be configured manually.
Environment Modules
Run module spider evidencemodeler to find out what environment modules are available for this application.
System Variables
- HPC_EVIDENCEMODELER_DIR - installation directory
- HPC_EVIDENCEMODELER_BIN - executable directory