Difference between revisions of "DeepPicker"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) |
|||
| (3 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Imaging]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|deeppicker}} | |{{#vardefine:app|deeppicker}} | ||
| Line 21: | Line 21: | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | < | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executables directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 14:34, 15 August 2022
Description
DeepPicker employs a novel cross-molecule training strategy to capture common features of particles from previously-analyzed micrographs, and thus does not require any human intervention during particle picking.
Environment Modules
Run module spider deeppicker to find out what environment modules are available for this application.
System Variables
- HPC_DEEPPICKER_DIR - installation directory
- HPC_DEEPPICKER_BIN - executables directory
Additional Information
This software is installed in a container.
Basic usage:
launch_deeppicker autoPick.py --help
To see the list of available executables:
launch_deeppicker ls $HPC_DEEPPICKER_BIN