Difference between revisions of "DeTiN"

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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|detin}} |{{#vardefine:url|https://github.com/broadinstitute/deTiN}} <!--CONFIGURATION: OPTIONAL (|1}}...")
 
 
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[[Category:Software]]
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[[Category:Software]][[Category:NGS]][[Category:Genomics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|detin}}
 
|{{#vardefine:app|detin}}
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 14:39, 15 August 2022

Description

detin website  

DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

Environment Modules

Run module spider detin to find out what environment modules are available for this application.

System Variables

  • HPC_DETIN_DIR - installation directory