Difference between revisions of "DSSP"

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__NOTOC__
 
__NOTOC__
 
__NOEDITSECTION__
 
__NOEDITSECTION__
[[Category:Software]][[Category:Biology]]
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[[Category:Software]][[Category:Molecular Dynamics]]
 
{|<!--Main settings - REQUIRED-->
 
{|<!--Main settings - REQUIRED-->
 
|{{#vardefine:app|DSSP}}
 
|{{#vardefine:app|DSSP}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
[[Modules|modules documentation]]
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
=== Serial (with Intel compiler) ===
 
*intel/2013
 
*{{#lowercase:{{#var:app}}}}
 
 
 
=== Serial (with GCC) ===
 
*gcc/4.7.2
 
*{{#lowercase:{{#var:app}}}}
 
 
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
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WRITE CITATION HERE
 
WRITE CITATION HERE
 
|}}
 
|}}
=Validation=
 
* Validated 4/5/2018
 

Latest revision as of 19:51, 13 June 2022

Description

DSSP website  

The DSSP program was designed by Wolfgang Kabsch and Chris Sander to standardize secondary structure assignment. DSSP is a database of secondary structure assignments (and much more) for all protein entries in the Protein Data Bank (PDB). DSSP is also the program that calculates DSSP entries from PDB entries. DSSP does not predict secondary structure.

Environment Modules

Run module spider DSSP to find out what environment modules are available for this application.

System Variables

  • HPC_DSSP_DIR - installation directory
  • HPC_DSSP_BIN - executable directory