DISCOVAR de novo
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Description
DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-art data. Their inputs are chosen to optimize quality while keeping costs low. Currently it takes as input Illumina reads of length 250 or longer — produced on MiSeq or HiSeq 2500 — and from a single PCR-free library. These data enable a level of completeness and continuity that was not previously possible.
Environment Modules
Run module spider discovardenovo to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:discovardenovo}}_DIR - installation directory
- HPC_{{#uppercase:discovardenovo}}_BIN - executable directory
- HPC_{{#uppercase:discovardenovo}}_DOC - documentation directory
- HPC_{{#uppercase:discovardenovo}}_EXE - examples directory