Difference between revisions of "DISCOVAR de novo"
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Latest revision as of 14:41, 15 August 2022
Description
DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-art data. Their inputs are chosen to optimize quality while keeping costs low. Currently it takes as input Illumina reads of length 250 or longer — produced on MiSeq or HiSeq 2500 — and from a single PCR-free library. These data enable a level of completeness and continuity that was not previously possible.
Environment Modules
Run module spider discovardenovo to find out what environment modules are available for this application.
System Variables
- HPC_DISCOVARDENOVO_DIR - installation directory
- HPC_DISCOVARDENOVO_BIN - executable directory
- HPC_DISCOVARDENOVO_DOC - documentation directory
- HPC_DISCOVARDENOVO_EXE - examples directory