Disambiguation of aligned reads is performed per-template and all information across primary, secondary, and supplementary alignments is used as evidence. Alignment disambiguation is commonly used when analyzing sequencing data from transduction, transfection, transgenic, or xenographic (including patient derived xenograft) experiments. This tool works by comparing various alignment scores between a template that has been aligned to many references in order to determine which reference is the most likely source.
module spider cvbio to find out what environment modules are available for this application.
- HPC_CVBIO_DIR - installation directory
- HPC_CVBIO_BIN - executable directory