Cutadapt
Revision as of 01:53, 10 August 2012 by Moskalenko (talk | contribs) (Text replace - "{{App_Description|app={{#var:app}}|url={{#var:url}}}}|}}" to "{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} ")
Description
cutadapt removes adapter sequences from high-throughput sequencing data. This is usually necessary when the read length of the sequencing machine is longer than the molecule that is sequenced, for example when sequencing microRNAs. Template:App Location
Available versions
- 1.1
Running the application using modules
To use cutadapt with the environment modules system at HPC the following commands are available:
Get module information for cutadapt:
$module spider cutadapt
Load the default application module:
$module load cutadapt
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_CUTADAPT_DIR - directory where cutadapt is located.
- HPC_CUTADAPT_BIN - executable directory