Crass

From UFRC
Revision as of 13:40, 30 March 2017 by Maxprok (talk | contribs)
Jump to navigation Jump to search

Description

crass website  

Crass is a program that searches through raw metagenomic reads for Clustered Regularly Interspersed Short Palindromic Repeats

Required Modules

Serial

  • gcc/5.2.0
  • crass

System Variables

  • HPC_{{#uppercase:crass}}_DIR - installation directory
  • HPC_{{#uppercase:crass}}_BIN - executable directory
  • HPC_{{#uppercase:crass}}_DOC - documentation directory
  • HPC_{{#uppercase:crass}}_MAN - manual directory





Citation

If you publish research that uses crass you have to cite it as follows:

Connor T. Skennerton, Michael Imelfort, and Gene W. Tyson Crass: identification and reconstruction of CRISPR from unassembled metagenomic data Nucl. Acids Res. (2013) 41(10): e105