Difference between revisions of "Cliquesnv"

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DESCRIPTION
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Scalable reconstruction of intra-host viral populations from NGS reads
  
 
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Revision as of 20:16, 1 May 2024

Description

cliquesnv website  

Scalable reconstruction of intra-host viral populations from NGS reads

Environment Modules

Run module spider cliquesnv to find out what environment modules are available for this application.

System Variables

  • HPC_CLIQUESNV_DIR - installation directory
  • HPC_CLIQUESNV_BIN - executable directory

Additional Information

WRITE_ADDITIONAL_INSTRUCTIONS_ON_RUNNING_THE_SOFTWARE_IF_NECESSARY



Citation

If you publish research that uses cliquesnv you have to cite it as follows:

Knyazev S, Tsyvina V, Shankar A, Melnyk A, Artyomenko A, Malygina T, Porozov YB, Campbell EM, Switzer WM, Skums P, Mangul S, Zelikovsky A. Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction. Nucleic Acids Res. 2021 Jul 2:gkab576. doi: 10.1093/nar/gkab576. Epub ahead of print. PMID: 34214168.

https://pubmed.ncbi.nlm.nih.gov/34214168/