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clipkit website  

ClipKIT is a fast and flexible alignment trimming tool that keeps phylogenetically informative sites and removes those that display characteristics poor phylogenetic signal.

Environment Modules

Run module spider clipkit to find out what environment modules are available for this application.

System Variables

  • HPC_CLIPKIT_DIR - installation directory
  • HPC_CLIPKIT_BIN - executable directory


If you publish research that uses clipkit you have to cite it as follows:

ClipKIT: a multiple sequence alignment trimming software for accurate phylogenomic inference. Steenwyk et al. 2020, PLoS Biology. doi: 10.1371/journal.pbio.3001007.