Difference between revisions of "CisGenome"

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m (Text replace - "|{{#vardefine:intel|}} <!-- E.g. "11.1" --> |{{#vardefine:mpi|}} <!-- E.g. "openmpi/1.3.4" -->" to "")
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__NOEDITSECTION__
 
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[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
 
[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
 
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{|<!--Main settings - REQUIRED-->
{|
 
<!--Main settings - REQUIRED-->
 
 
|{{#vardefine:app|cisgenome}}
 
|{{#vardefine:app|cisgenome}}
 
|{{#vardefine:url|http://www.biostat.jhsph.edu/~hji/cisgenome/index.htm}}
 
|{{#vardefine:url|http://www.biostat.jhsph.edu/~hji/cisgenome/index.htm}}
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|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
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===Serial===
 
===Serial===
 
*{{#var:app}}
 
*{{#var:app}}
* HPC_CISGENOME_BIN - executable directory
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==System Variables==
{{#if: {{#var: exe}}|==How To Run==
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* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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<!--Additional-->
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{{#if: {{#var: exe}}|==Additional Information==
 
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}}
 
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}}
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Revision as of 18:05, 10 August 2012

Description

cisgenome website  

An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis.

Required Modules

modules documentation

Serial

  • cisgenome

System Variables

  • HPC_{{#uppercase:cisgenome}}_DIR - installation directory