Difference between revisions of "CisGenome"

Latest revision as of 18:30, 12 August 2022

An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis.

Run module spider cisgenome to find out what environment modules are available for this application.

@@ Line 1: / Line 1: @@
 __NOTOC__
 __NOEDITSECTION__
-[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
+[[Category:Software]][[Category:Biology]][[Category:Genomics]]
+{|<!--Main settings - REQUIRED-->
-{|
-<!--Main settings - REQUIRED-->
 |{{#vardefine:app|cisgenome}}
 |{{#vardefine:url|http://www.biostat.jhsph.edu/~hji/cisgenome/index.htm}}
-<!--Compiler and MPI settings - OPTIONAL -->
 |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 |{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF-->
@@ Line 26: / Line 21: @@
 <!--Modules-->
-==Required Modules==
+==Environment Modules==
-[[Modules|modules documentation]]
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-===Serial===
+==System Variables==
-*{{#var:app}}
+* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
-* HPC_CISGENOME_BIN - executable directory
+<!--Additional-->
-{{#if: {{#var: exe}}|==How To Run==
+{{#if: {{#var: exe}}|==Additional Information==
 WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}}
 {{#if: {{#var: conf}}|==Configuration==