CheckV is a fully automated command-line pipeline for assessing the quality of single-contig viral genomes, including identification of host contamination for integrated proviruses, estimating completeness for genome fragments, and identification of closed genomes.
module spider checkv to find out what environment modules are available for this application.
- HPC_CHECKV_DIR - installation directory
- HPC_CHECKV_BIN - executable directory
- CHECKVDB - reference data directory