CellRanger-DNA

From UFRC
Revision as of 21:00, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

cellranger-dna website  

Cell Ranger DNA is a set of analysis pipelines that process Chromium single cell DNA sequencing output to align reads, identify copy number variation (CNV), and compare heterogeneity among cells.

Environment Modules

Run module spider cellranger-dna to find out what environment modules are available for this application.

System Variables

  • HPC_CELLRANGER-DNA_DIR - installation directory

Additional Information

Available references: GRCh37, GRCh38